Index

A

assign_cluster_representative() (in module RepLikCompare.clustering.assign_cluster_representative)

C

compute_cluster_dbscan() (in module RepLikCompare.clustering.compute_cluster_dbscan) compute_cluster_GMM() (in module RepLikCompare.clustering.compute_cluster_GMM) compute_cluster_hdbscan() (in module RepLikCompare.clustering.compute_cluster_hdbscan) compute_cluster_kmean() (in module RepLikCompare.clustering.compute_cluster_kmean) compute_convergence() (in module RepLikCompare.EnsembleComparison.compute_convergence) compute_jsd() (in module RepLikCompare.EnsembleComparison.compute_jsd)

compute_kpca() (in module RepLikCompare.dimensionality_reduction.compute_kpca) compute_pca() (in module RepLikCompare.dimensionality_reduction.compute_pca) compute_secondary_structure_timeline() (in module RepLikCompare.plotting.compute_secondary_structure_timeline) compute_tsne() (in module RepLikCompare.dimensionality_reduction.compute_tsne) compute_umap() (in module RepLikCompare.dimensionality_reduction.compute_umap) compute_wasserstein() (in module RepLikCompare.EnsembleComparison.compute_wasserstein)

H

hierarchical_clustering() (in module RepLikCompare.clustering.hierarchical_clustering)

P

plot_cluster_timeline() (in module RepLikCompare.plotting.plot_cluster_timeline) plot_contact_map() (in module RepLikCompare.plotting.plot_contact_map) plot_distri_norm() (in module RepLikCompare.plotting.plot_distri_norm) plot_free_energy() (in module RepLikCompare.plotting.plot_free_energy) plot_free_energy_facet() (in module RepLikCompare.plotting.plot_free_energy) plot_lineplot_avg() (in module RepLikCompare.plotting.plot_lineplot_avg)

plot_lineplot_facet() (in module RepLikCompare.plotting.plot_lineplot_avg) plot_rmsd() (in module RepLikCompare.plotting.plot_rmsd) plot_rmsf() (in module RepLikCompare.plotting.plot_rmsf) plot_scatter() (in module RepLikCompare.plotting.plot_scatter) plot_scatter_facet() (in module RepLikCompare.plotting.plot_scatter) plot_vonmises() (in module RepLikCompare.plotting.plot_vonmises)