All modules for which code is available

• RepLikCompare.EnsembleComparison.compute_convergence
• RepLikCompare.EnsembleComparison.compute_jsd
• RepLikCompare.EnsembleComparison.compute_wasserstein
• RepLikCompare.clustering.assign_cluster_representative
• RepLikCompare.clustering.compute_cluster_GMM
• RepLikCompare.clustering.compute_cluster_dbscan
• RepLikCompare.clustering.compute_cluster_hdbscan
• RepLikCompare.clustering.compute_cluster_kmean
• RepLikCompare.clustering.hierarchical_clustering
• RepLikCompare.dimensionality_reduction.compute_kpca
• RepLikCompare.dimensionality_reduction.compute_pca
• RepLikCompare.dimensionality_reduction.compute_tsne
• RepLikCompare.dimensionality_reduction.compute_umap
• RepLikCompare.plotting.compute_secondary_structure_timeline
• RepLikCompare.plotting.plot_cluster_timeline
• RepLikCompare.plotting.plot_contact_map
• RepLikCompare.plotting.plot_distri_norm
• RepLikCompare.plotting.plot_free_energy
• RepLikCompare.plotting.plot_lineplot_avg
• RepLikCompare.plotting.plot_rmsd
• RepLikCompare.plotting.plot_rmsf
• RepLikCompare.plotting.plot_scatter
• RepLikCompare.plotting.plot_vonmises